Plant GARDEN
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TOP > About the Species(Nicotiana tabacum var. TN90) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Nicotiana tabacum

CDS Sequence

CDS ID

lcl|NW_015836014.1_cds_XP_016506152.1_19409
CDS Infomation

[gene=LOC107823954] [db_xref=GeneID:107823954] [protein=DEAD-box ATP-dependent RNA helicase 39-like] [protein_id=XP_016506152.1] [location=join(23756..24304,26081..26176,26260..26448,26519..26659,30334..30474,31339..31481,32038..32167,32275..32323,32892..33343)] [gbkey=CDS]
Sequence

ATGGGAGGAACAGGAAGAGCACTGCTAAACCTCTCTCTCACTTCCTCCTCCGCTTCTTCC
CTCCGTTTCTCTTTCTCTCTCCTCCCTTCCCGTTTTCCTTTCGCCACAAAACCACTTCTT
CCCCAAACCCCTAGGGTTTTACTAGGGTTTAGACCTCTTTGTTCCACCACCACCACCACA
ACTACTACGACTGCTGAAGAATCACTAATTCAACCCATTAAGCATTCAATTCTATTAGAA
AGGCTTAGACTTAGACATCTTAAAGAATCTGCAAAGCCCAATTTAGAACCCAAACAATTA
ACACAAAAATTTAAAGCTGAGGTGGATGATGATGGAGTTAAGAAGAGTAAGAAAAAGGCG
GTGGCGTCGAGTTTTGAGGAGTTGGGTTTGAGTGAAGAGGTAATGGGGGCGTTAGGTGAA
CTGGGTATTGAAGTGCCGACTGAGATTCAGTCAATTGGGATACCTGCTGTGATTGAGGGG
AAAAGTGTGGTTTTGGGTTCGCATACGGGTTCTGGCAAGACTCTTGCTTATATGTTGCCT
ATTGTTCAGTTGTTGAGACAAGAAGAGGAATTGCATGGTATGCACATGAAGCCTAGGCGC
CCCCGAGCTGTTGTGCTATGCCCTACTAGGGAGCTCTGTGAGCAGGTTTTTCGTGTGGCA
AAGTCTATCAGTCATCATGCACGGTTCAGATCTACCATGGTTAGTGGTGGCGGCCGTTTG
AGACCTCAAGAAGATTCTTTGGGTGGCCCAATTGACATGATTGTGGGGACTCCAGGCAGG
GTTCTACAACATATTGAAGAGGGAAACGTGGTTTATGGTGACATCAGATACTTGGTCTTG
GATGAGGCTGATACCATGTTTGATCGCGGTTTTGGTCCTGATATACGAAAATTTCTTGCA
CCGCTGAAAAACCGTGCTTCGAAGCCTGGTGATGAAGGATTTCAAACCGTGTTGGTGACA
GCAACAATGACAAAGGCAGTTCAAAAGCTGGTTGACGAGGAGTTTCAAGGGATTCAGCAT
TTACGTACTTCTACATTACATAAGAAGATTGCTTCTGCTCGTCATGATTTCATCAAACTT
TCAGGTTCTGAGAACAAGCTGGAGGCGTTGCTACAGGTTCTTGAGCCAAGTTTAGCAAAG
GGCAATAGAGTGATGGTATTCTGTAACACGTTGAATTCCAGTCGTGCTGTGGATCACTTT
CTCAGTGAAAACCAATTTTCTACTGTTAACTACCATGGGGAAGTTCCAGCAGAACAAAGG
GTTGAAAACCTTGCAAAGTTTAAGAGCGATGAAGGAGATTGTCCCACTTTGGTCTGCACA
GACTTGGCTGCTAGAGGACTGGATTTAGATGTGGATCATGTCGTCATGTTTGATTTCCCT
TTGAATTCTATTGATTATCTCCATCGCACTGGAAGAACTGCTCGTATGGGTGCCAAAGGG
AAAGTTACAAGTTTGGTTGCCAAAAAGGACTTGCTTTTGGCCGCTCGCATCGAGGAAGCC
ATGATGAAGAATGAGAGCTTGGAGGCTCTCTCAGTAGACGGTGTCAAAAGGGATATTGCC
AGGTCTCGCATAACTGAACAGAAGGACAAGCGTGAAAAGTTGGTCAAAGCTTCAAATTCA
AGAGGCAAGGCTAAAGCTTCCACAGGTAAATCCTCGAGTGTTGGTAGAAAGACCGATTCA
AAAACATCTCCTGGAGCAAAGTCTGGCAAAGTACCAGCTAAGTCAAAACCGAAGATAGCA
ATCAAGGTATCCAAGAGGGTTAGCACTTCCACTGGTAAGAGACGAGTAGACAGCCGAAGC
TCTAGCGTCTCCACGTCGAAACTAAATGTTGTTGGATTCAGGGGCAGGAGTTCATCATCG
AGTAAAAACGCAAATGTTAGGGCTGGTTAA

Peptide Sequence

PEP ID

XP_016506152.1
PEP Infomation

PREDICTED: DEAD-box ATP-dependent RNA helicase 39-like [Nicotiana tabacum]
Sequence

MGGTGRALLNLSLTSSSASSLRFSFSLLPSRFPFATKPLLPQTPRVLLGFRPLCSTTTTT
TTTTAEESLIQPIKHSILLERLRLRHLKESAKPNLEPKQLTQKFKAEVDDDGVKKSKKKA
VASSFEELGLSEEVMGALGELGIEVPTEIQSIGIPAVIEGKSVVLGSHTGSGKTLAYMLP
IVQLLRQEEELHGMHMKPRRPRAVVLCPTRELCEQVFRVAKSISHHARFRSTMVSGGGRL
RPQEDSLGGPIDMIVGTPGRVLQHIEEGNVVYGDIRYLVLDEADTMFDRGFGPDIRKFLA
PLKNRASKPGDEGFQTVLVTATMTKAVQKLVDEEFQGIQHLRTSTLHKKIASARHDFIKL
SGSENKLEALLQVLEPSLAKGNRVMVFCNTLNSSRAVDHFLSENQFSTVNYHGEVPAEQR
VENLAKFKSDEGDCPTLVCTDLAARGLDLDVDHVVMFDFPLNSIDYLHRTGRTARMGAKG
KVTSLVAKKDLLLAARIEEAMMKNESLEALSVDGVKRDIARSRITEQKDKREKLVKASNS
RGKAKASTGKSSSVGRKTDSKTSPGAKSGKVPAKSKPKIAIKVSKRVSTSTGKRRVDSRS
SSVSTSKLNVVGFRGRSSSSSKNANVRAG

Transcript Sequence

Gene sequence data has not been registered.